{ "_id": "6a1ebf53b25058d4daae1c5c", "Package": "rtry", "Title": "Preprocessing Plant Trait Data", "Version": "1.1.0", "Authors@R": "c(\nperson(given = \"Olee Hoi Ying\",\nfamily = \"Lam\",\nemail = \"hlam9@wisc.edu\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-7731-3246\")),\nperson(given = \"Susanne\",\nfamily = \"Tautenhahn\",\nemail = \"staut@bgc-jena.mpg.de\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-2753-3443\")),\nperson(given = \"Gabriel\",\nfamily = \"Walther\",\nemail = \"gabriel.walther@uni-jena.de\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-3550-9045\")),\nperson(given = \"Gerhard\",\nfamily = \"Boenisch\",\nemail = \"boenisch@bgc-jena.mpg.de\",\nrole = c(\"aut\")),\nperson(given = \"Pramod\",\nfamily = \"Baddam\",\nemail = \"pbaddam@bgc-jena.mpg.de\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-7858-9295\")),\nperson(given = \"Jens\",\nfamily = \"Kattge\",\nemail = \"jkattge@bgc-jena.mpg.de\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-1022-8469\")),\nperson(given = \"Fellowship Group Functional Biogeography at MPI-BGC, Jena, Germany\",\nrole = c(\"cph\")))", "Description": "Designed to support the application of plant trait data\nproviding easy applicable functions for the basic steps of data\npreprocessing, e.g. data import, data exploration, selection of\ncolumns and rows, excluding trait data according to different\nattributes, geocoding, long- to wide-table transformation, and\ndata export. 'rtry' was initially developed as part of the TRY\nR project to preprocess trait data received via the TRY\ndatabase.", "License": "CC BY 4.0", "URL": "https://github.com/MPI-BGC-Functional-Biogeography/rtry,\nhttps://www.try-db.org/TryWeb/Home.php", "BugReports": "https://github.com/MPI-BGC-Functional-Biogeography/rtry/issues", "Encoding": "UTF-8", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.3", "VignetteBuilder": "knitr", "Maintainer": "Olee Hoi Ying Lam ", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-02 07:52:18 UTC", "User": "root" }, "Config/pak/sysreqs": "libicu-dev libssl-dev", "Repository": "https://mpi-bgc-functional-biogeography.r-universe.dev", "Date/Publication": "2023-08-09 19:51:36 UTC", "RemoteUrl": "https://github.com/mpi-bgc-functional-biogeography/rtry", "RemoteRef": "HEAD", "RemoteSha": "f15ed7159910236d510801e6ff11b915aaa20041", "Author": "Olee Hoi Ying Lam [aut, cre] (ORCID:\n),\nSusanne Tautenhahn [aut] (ORCID:\n),\nGabriel Walther [aut] (ORCID: ),\nGerhard Boenisch [aut],\nPramod Baddam [aut] (ORCID: ),\nJens Kattge [aut] (ORCID: ),\nFellowship Group Functional Biogeography at MPI-BGC, Jena, Germany\n[cph]", "MD5sum": "e4737137faae4985058f06ebb1865ef5", "_user": "mpi-bgc-functional-biogeography", "_type": "src", "_file": "rtry_1.1.0.tar.gz", "_fileid": "52fbc67b10810043566b2c086ec81798a6d44b08b144395524e13e78b22a0d8e", "_filesize": 1956684, "_sha256": "52fbc67b10810043566b2c086ec81798a6d44b08b144395524e13e78b22a0d8e", "_created": "2026-06-02T07:52:18.000Z", "_published": "2026-06-02T11:32:35.475Z", "_distro": "noble", "_jobs": [ { "job": 79060994471, "time": 129, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7352013354" }, { "job": 79060994483, "time": 130, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7352013367" }, { "job": 79060994479, "time": 150, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7352010280" }, { "job": 79060994333, "time": 159, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7352012496" }, { "job": 79060994088, "time": 191, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7351968374" }, { "job": 79060994454, "time": 106, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7352005022" }, { "job": 79060994668, "time": 79, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7351995917" }, { "job": 79060994680, "time": 78, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7351995580" }, { "job": 79060994453, "time": 68, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7351992071" } ], "_buildurl": "https://github.com/r-universe/mpi-bgc-functional-biogeography/actions/runs/26806100499", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/mpi-bgc-functional-biogeography/rtry", "_commit": { "id": "f15ed7159910236d510801e6ff11b915aaa20041", "author": "oleelamhy ", "committer": "oleelamhy ", "message": "Updated package information for new CRAN submission\n", "time": 1691610696 }, "_maintainer": { "name": "Olee Hoi Ying Lam", "email": "hlam9@wisc.edu", "login": "oleelamhy", "description": "Ph.D. candidate at UW-Madison", "uuid": 9142621, "orcid": "0000-0002-7731-3246" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "utils", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "curl", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "mpi-bgc-functional-biogeography", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 26, "_contributors": [ { "user": "oleelamhy", "count": 358, "uuid": 9142621 } ], "_userbio": { "uuid": 86422041, "type": "user", "name": "MPI-BGC-Functional-Biogeography" }, "_downloads": { "count": 303, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rtry" }, "_devurl": "https://github.com/mpi-bgc-functional-biogeography/rtry", "_searchresults": 38, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/rtry.html", "manual.pdf" ], "_homeurl": "https://github.com/mpi-bgc-functional-biogeography/rtry", "_realowner": "mpi-bgc-functional-biogeography", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2022-01-17" }, { "version": "1.1.0", "date": "2023-08-09" } ], "_exports": [ "%>%", "rtry_bind_col", "rtry_bind_row", "rtry_exclude", "rtry_explore", "rtry_export", "rtry_geocoding", "rtry_import", "rtry_join_left", "rtry_join_outer", "rtry_remove_col", "rtry_remove_dup", "rtry_revgeocoding", "rtry_select_anc", "rtry_select_col", "rtry_select_row", "rtry_trans_wider" ], "_datasets": [ { "name": "data_coordinates", "title": "Sample coordinates data", "object": "data_coordinates", "class": [ "data.table", "data.frame" ], "fields": [ "Latitude", "Longitude" ], "rows": 20, "table": true, "tojson": true }, { "name": "data_locations", "title": "Sample locations data", "object": "data_locations", "class": [ "data.table", "data.frame" ], "fields": [ "Country code", "Country", "Location" ], "rows": 20, "table": true, "tojson": true }, { "name": "data_TRY_15160", "title": "Sample TRY data (Request 15160)", "object": "data_TRY_15160", "class": [ "data.table", "data.frame" ], "fields": [ "LastName", "FirstName", "DatasetID", "Dataset", "SpeciesName", "AccSpeciesID", "AccSpeciesName", "ObservationID", "ObsDataID", "TraitID", "TraitName", "DataID", "DataName", "OriglName", "OrigValueStr", "OrigUnitStr", "ValueKindName", "OrigUncertaintyStr", "UncertaintyName", "Replicates", "StdValue", "UnitName", "RelUncertaintyPercent", "OrigObsDataID", "ErrorRisk", "Reference", "Comment", "V28" ], "rows": 1782, "table": true, "tojson": true }, { "name": "data_TRY_15161", "title": "Sample TRY data (Request 15161)", "object": "data_TRY_15161", "class": [ "data.table", "data.frame" ], "fields": [ "LastName", "FirstName", "DatasetID", "Dataset", "SpeciesName", "AccSpeciesID", "AccSpeciesName", "ObservationID", "ObsDataID", "TraitID", "TraitName", "DataID", "DataName", "OriglName", "OrigValueStr", "OrigUnitStr", "ValueKindName", "OrigUncertaintyStr", "UncertaintyName", "Replicates", "StdValue", "UnitName", "RelUncertaintyPercent", "OrigObsDataID", "ErrorRisk", "Reference", "Comment", "V28" ], "rows": 4627, "table": true, "tojson": true } ], "_help": [ { "page": "data_coordinates", "title": "Sample coordinates data", "topics": [ "data_coordinates" ] }, { "page": "data_locations", "title": "Sample locations data", "topics": [ "data_locations" ] }, { "page": "data_TRY_15160", "title": "Sample TRY data (Request 15160)", "topics": [ "data_TRY_15160" ] }, { "page": "data_TRY_15161", "title": "Sample TRY data (Request 15161)", "topics": [ "data_TRY_15161" ] }, { "page": "rtry_bind_col", "title": "Bind data by columns", "topics": [ "rtry_bind_col" ] }, { "page": "rtry_bind_row", "title": "Bind data by rows", "topics": [ "rtry_bind_row" ] }, { "page": "rtry_exclude", "title": "Exclude (remove) data", "topics": [ "rtry_exclude" ] }, { "page": "rtry_explore", "title": "Explore data", "topics": [ "rtry_explore" ] }, { "page": "rtry_export", "title": "Export preprocessed data", "topics": [ "rtry_export" ] }, { "page": "rtry_geocoding", "title": "Perform geocoding", "topics": [ "rtry_geocoding" ] }, { "page": "rtry_import", "title": "Import data", "topics": [ "rtry_import" ] }, { "page": "rtry_join_left", "title": "Left join for two data frames", "topics": [ "rtry_join_left" ] }, { "page": "rtry_join_outer", "title": "Outer join for two data frames", "topics": [ "rtry_join_outer" ] }, { "page": "rtry_remove_col", "title": "Remove columns", "topics": [ "rtry_remove_col" ] }, { "page": "rtry_remove_dup", "title": "Remove duplicates in data", "topics": [ "rtry_remove_dup" ] }, { "page": "rtry_revgeocoding", "title": "Perform reverse geocoding", "topics": [ "rtry_revgeocoding" ] }, { "page": "rtry_select_anc", "title": "Select ancillary data in wide table format", "topics": [ "rtry_select_anc" ] }, { "page": "rtry_select_col", "title": "Select columns", "topics": [ "rtry_select_col" ] }, { "page": "rtry_select_row", "title": "Select rows", "topics": [ "rtry_select_row" ] }, { "page": "rtry_trans_wider", "title": "Transform data from long to wide table", "topics": [ "rtry_trans_wider" ] } ], "_readme": "https://github.com/mpi-bgc-functional-biogeography/rtry/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "curl", "data.table", "dplyr", "generics", "glue", "jsonlite", "lifecycle", "magrittr", "pillar", "pkgconfig", "purrr", "R6", "rlang", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr" ], "_vignettes": [ { "source": "rtry-introduction.Rmd", "filename": "rtry-introduction.html", "title": "Introduction to rtry", "engine": "knitr::rmarkdown", "headings": [ "Overview", "The TRY data format", "The 'rtry' package", "Sources of 'rtry'", "R environment", "Memory requirement", "Installation guide", "Update the 'rtry' package", "R commands to retrieve information about the package", "Check 'rtry' version", "Obtain documentations of the 'rtry' package", "Obtain documentation for a specific function", "Obtain documentation for the sample data", "Obtain vignettes of the package", "Functionality of the 'rtry' package", "Function default arguments", "Functions within the 'rtry' package", "Handling of data within 'rtry'", "Sample datasets within the 'rtry' package", "Copyright license", "References" ], "created": "2021-07-27 10:36:54", "modified": "2023-08-03 21:24:21", "commits": 23 }, { "source": "rtry-workflow-general.Rmd", "filename": "rtry-workflow-general.html", "title": "Workflow for general data preprocessing using rtry", "engine": "knitr::rmarkdown", "headings": [ "Prepare the workflow environment", "Import TRY data", "Explore the imported data", "Bind imported data by rows", "Select columns", "Select rows", "Save and load backup data", "Exclude (remove) data", "Exclude (remove) observations of juvenile plants or saplings", "Exclude observations without geo-referenced information and from irrelevant regions", "Exclude non-representative sub-traits", "Exclude data according to standard values (StdValue)", "Exclude outliers according to error risk (ErrorRisk)", "Remove duplicates based on duplicate identifier (OrigObsDataID)", "Transform to wide table", "Export preprocessed TRY data" ], "created": "2021-06-14 19:56:50", "modified": "2023-08-09 17:04:49", "commits": 30 }, { "source": "rtry-workflow-geocoding.Rmd", "filename": "rtry-workflow-geocoding.html", "title": "Workflow for geocoding using rtry", "engine": "knitr::rmarkdown", "headings": [ "Prepare the workflow environment", "Use 'rtry' for geocoding", "Use 'rtry' for reverse geocoding" ], "created": "2021-04-12 12:24:15", "modified": "2022-01-15 01:07:08", "commits": 27 } ], "_score": 6.17084820364331, "_indexed": true, "_nocasepkg": "rtry", "_universes": [ "mpi-bgc-functional-biogeography", "oleelamhy" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-06-02T07:54:29.000Z", "distro": "noble", "commit": "f15ed7159910236d510801e6ff11b915aaa20041", "fileid": "d5943b9a48ffb126e29a686bce634e1801850c7c0afc41914706fa3c65574547", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/mpi-bgc-functional-biogeography/actions/runs/26806100499" }, { "r": "4.6.0", "os": "linux", "version": "1.1.0", "date": "2026-06-02T07:54:30.000Z", "distro": "noble", "commit": "f15ed7159910236d510801e6ff11b915aaa20041", "fileid": "a1dec93e6c2feeaa475d7a55941a8b0957b0365538142dc714da994f6a1659be", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/mpi-bgc-functional-biogeography/actions/runs/26806100499" }, { "r": "4.5.3", "os": "mac", "version": "1.1.0", "date": "2026-06-02T07:54:26.000Z", "commit": "f15ed7159910236d510801e6ff11b915aaa20041", "fileid": "5105de3ace01bfb00e1aee4ac62ee6703d1a826f09ed4d2d0cd1692b7f772e33", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/mpi-bgc-functional-biogeography/actions/runs/26806100499" }, { "r": "4.6.0", "os": "mac", "version": "1.1.0", "date": "2026-06-02T07:54:28.000Z", "commit": "f15ed7159910236d510801e6ff11b915aaa20041", "fileid": "9ecd8ff2b2cc4b3b1959713124fd98e93a537954cf6557776a47bfa39d537bd5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/mpi-bgc-functional-biogeography/actions/runs/26806100499" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.0", "date": "2026-06-02T07:54:21.000Z", "commit": "f15ed7159910236d510801e6ff11b915aaa20041", "fileid": "93c861731f908e4ece40f77fe0a39162be9d598512861f4f8f48963c33d2bc42", "status": "success", "buildurl": "https://github.com/r-universe/mpi-bgc-functional-biogeography/actions/runs/26806100499" }, { "r": "4.7.0", "os": "win", "version": "1.1.0", "date": "2026-06-02T07:53:34.000Z", "commit": "f15ed7159910236d510801e6ff11b915aaa20041", "fileid": "3909508b631acec2cf57c613f02ac4f8ed4532c879ca00dcaf110830ae407987", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/mpi-bgc-functional-biogeography/actions/runs/26806100499" }, { "r": "4.5.3", "os": "win", "version": "1.1.0", "date": "2026-06-02T07:53:33.000Z", "commit": "f15ed7159910236d510801e6ff11b915aaa20041", "fileid": "1c9998f51f1b2c5caefe330411c37539a28728fa564c1556c22cf74d3621381d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/mpi-bgc-functional-biogeography/actions/runs/26806100499" }, { "r": "4.6.0", "os": "win", "version": "1.1.0", "date": "2026-06-02T07:53:23.000Z", "commit": "f15ed7159910236d510801e6ff11b915aaa20041", "fileid": "f81efa1c5468cb119ca7fc3a7096201fb11e6617e9709428b627601e7233aa17", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/mpi-bgc-functional-biogeography/actions/runs/26806100499" } ] }